diff --git a/build/make/configure.sh b/build/make/configure.sh
index f22e3e0..d25f313 100755
--- a/build/make/configure.sh
+++ b/build/make/configure.sh
@@ -1222,7 +1222,12 @@
         fi
     fi
 
-    enabled debug && check_add_cflags -g && check_add_ldflags -g
+    if enabled debug; then
+        check_add_cflags -g && check_add_ldflags -g
+    else
+        check_add_cflags -DNDEBUG
+    fi
+
     enabled gprof && check_add_cflags -pg && check_add_ldflags -pg
     enabled gcov &&
         check_add_cflags -fprofile-arcs -ftest-coverage &&
diff --git a/configure b/configure
index b8159c0..604ad73 100755
--- a/configure
+++ b/configure
@@ -271,7 +271,6 @@
     unistd_h
 "
 EXPERIMENT_LIST="
-    alpha
     multiple_arf
     spatial_svc
     denoising
diff --git a/test/frame_size_tests.cc b/test/frame_size_tests.cc
index d1ea096..b05d12e 100644
--- a/test/frame_size_tests.cc
+++ b/test/frame_size_tests.cc
@@ -89,7 +89,8 @@
   // one for each lag in frames (for 2 pass), and then one for each possible
   // reference buffer (8) - we can end up with up to 30 buffers of roughly this
   // size or almost 1 gig of memory.
-  video.SetSize(4096, 4096);
+  // TODO(jzern): restore this to at least 4096x4096 after issue #828 is fixed.
+  video.SetSize(4096, 2160);
   video.set_limit(2);
   expected_res_ = VPX_CODEC_OK;
   ASSERT_NO_FATAL_FAILURE(RunLoop(&video));
diff --git a/vp8/encoder/arm/neon/denoising_neon.c b/vp8/encoder/arm/neon/denoising_neon.c
index b7bb40c..08be76e 100644
--- a/vp8/encoder/arm/neon/denoising_neon.c
+++ b/vp8/encoder/arm/neon/denoising_neon.c
@@ -279,8 +279,8 @@
       {
         const uint32x2_t _7654_3210 = vpaddl_u16(v_sum_block);
         const uint64x1_t _76543210 = vpaddl_u32(_7654_3210);
-        const unsigned int sum_block =
-            vget_lane_u32(vreinterpret_u32_u64(_76543210), 0);
+        const int sum_block =
+            vget_lane_s32(vreinterpret_s32_u64(_76543210), 0);
         if (abs(sum_block - (128 * 8 * 8)) < SUM_DIFF_FROM_AVG_THRESH_UV) {
           return COPY_BLOCK;
         }
diff --git a/vp8/encoder/denoising.c b/vp8/encoder/denoising.c
index 0f0a36a..1a401a4 100644
--- a/vp8/encoder/denoising.c
+++ b/vp8/encoder/denoising.c
@@ -411,8 +411,8 @@
     MV_REFERENCE_FRAME zero_frame = x->best_zeromv_reference_frame;
 
     enum vp8_denoiser_decision decision = FILTER_BLOCK;
-    enum vp8_denoiser_decision decision_u = FILTER_BLOCK;
-    enum vp8_denoiser_decision decision_v = FILTER_BLOCK;
+    enum vp8_denoiser_decision decision_u = COPY_BLOCK;
+    enum vp8_denoiser_decision decision_v = COPY_BLOCK;
 
     if (zero_frame)
     {
diff --git a/vp8/encoder/onyx_if.c b/vp8/encoder/onyx_if.c
index 373dbeb..12e5011 100644
--- a/vp8/encoder/onyx_if.c
+++ b/vp8/encoder/onyx_if.c
@@ -1405,7 +1405,7 @@
         double prev_layer_framerate=0;
 
         assert(oxcf->number_of_layers <= VPX_TS_MAX_LAYERS);
-        for (i=0; i<oxcf->number_of_layers; i++)
+        for (i = 0; i < oxcf->number_of_layers && i < VPX_TS_MAX_LAYERS; ++i)
         {
             LAYER_CONTEXT *lc = &cpi->layer_context[i];
 
@@ -3232,17 +3232,9 @@
         if (cm->frame_type == KEY_FRAME)
         {
             int i;
-            vp8_yv12_copy_frame(
-                    cpi->Source,
-                    &cpi->denoiser.yv12_running_avg[LAST_FRAME]);
-
-            vp8_yv12_extend_frame_borders(
-                    &cpi->denoiser.yv12_running_avg[LAST_FRAME]);
-
-            for (i = 2; i < MAX_REF_FRAMES - 1; i++)
-                vp8_yv12_copy_frame(
-                        &cpi->denoiser.yv12_running_avg[LAST_FRAME],
-                        &cpi->denoiser.yv12_running_avg[i]);
+            for (i = LAST_FRAME; i < MAX_REF_FRAMES; ++i)
+              vp8_yv12_copy_frame(cpi->Source,
+                                  &cpi->denoiser.yv12_running_avg[i]);
         }
         else /* For non key frames */
         {
@@ -5037,7 +5029,8 @@
 
                 /* Update frame rates for each layer */
                 assert(cpi->oxcf.number_of_layers <= VPX_TS_MAX_LAYERS);
-                for (i=0; i<cpi->oxcf.number_of_layers; i++)
+                for (i = 0; i < cpi->oxcf.number_of_layers &&
+                     i < VPX_TS_MAX_LAYERS; ++i)
                 {
                     LAYER_CONTEXT *lc = &cpi->layer_context[i];
                     lc->framerate = cpi->ref_framerate /
diff --git a/vp8/vp8_cx_iface.c b/vp8/vp8_cx_iface.c
index cbff86c..a10c401 100644
--- a/vp8/vp8_cx_iface.c
+++ b/vp8/vp8_cx_iface.c
@@ -1316,7 +1316,7 @@
         "vp8.fpf"           /* first pass filename */
 #endif
         VPX_SS_DEFAULT_LAYERS, /* ss_number_layers */
-#ifdef CONFIG_SPATIAL_SVC
+#if CONFIG_SPATIAL_SVC
         {0},
 #endif
         {0},                /* ss_target_bitrate */
diff --git a/vp9/common/vp9_blockd.c b/vp9/common/vp9_blockd.c
index 2404cfc..dab8f96 100644
--- a/vp9/common/vp9_blockd.c
+++ b/vp9/common/vp9_blockd.c
@@ -146,10 +146,4 @@
     xd->plane[i].subsampling_x = i ? ss_x : 0;
     xd->plane[i].subsampling_y = i ? ss_y : 0;
   }
-#if CONFIG_ALPHA
-  // TODO(jkoleszar): Using the Y w/h for now
-  xd->plane[3].plane_type = PLANE_TYPE_Y;
-  xd->plane[3].subsampling_x = 0;
-  xd->plane[3].subsampling_y = 0;
-#endif
 }
diff --git a/vp9/common/vp9_blockd.h b/vp9/common/vp9_blockd.h
index 29af98a..fe03cca 100644
--- a/vp9/common/vp9_blockd.h
+++ b/vp9/common/vp9_blockd.h
@@ -168,11 +168,7 @@
   MV_PRECISION_Q4
 };
 
-#if CONFIG_ALPHA
-enum { MAX_MB_PLANE = 4 };
-#else
 enum { MAX_MB_PLANE = 3 };
-#endif
 
 struct buf_2d {
   uint8_t *buf;
diff --git a/vp9/common/vp9_enums.h b/vp9/common/vp9_enums.h
index 53cf7f1..0c2898d 100644
--- a/vp9/common/vp9_enums.h
+++ b/vp9/common/vp9_enums.h
@@ -27,10 +27,10 @@
 
 // Bitstream profiles indicated by 2-3 bits in the uncompressed header.
 // 00: Profile 0.  8-bit 4:2:0 only.
-// 10: Profile 1.  Adds 4:4:4, 4:2:2, alpha to Profile 0.
+// 10: Profile 1.  Adds 4:4:4, 4:2:2, and 4:4:0 to Profile 0.
 // 01: Profile 2.  Supports 10-bit and 12-bit color only, with 4:2:0 sampling.
-// 110: Profile 3. Supports 10-bit and 12-bit color only, with 4:2:2/4:4:4
-//                 sampling and alpha.
+// 110: Profile 3. Supports 10-bit and 12-bit color only, with 4:2:2/4:4:4/4:4:0
+//                 subsampling.
 // 111: Undefined profile.
 typedef enum BITSTREAM_PROFILE {
   PROFILE_0,
diff --git a/vp9/common/vp9_onyxc_int.h b/vp9/common/vp9_onyxc_int.h
index afe831a..97b267c 100644
--- a/vp9/common/vp9_onyxc_int.h
+++ b/vp9/common/vp9_onyxc_int.h
@@ -68,9 +68,6 @@
 
   DECLARE_ALIGNED(16, int16_t, y_dequant[QINDEX_RANGE][8]);
   DECLARE_ALIGNED(16, int16_t, uv_dequant[QINDEX_RANGE][8]);
-#if CONFIG_ALPHA
-  DECLARE_ALIGNED(16, int16_t, a_dequant[QINDEX_RANGE][8]);
-#endif
 
   COLOR_SPACE color_space;
 
@@ -134,10 +131,6 @@
   int y_dc_delta_q;
   int uv_dc_delta_q;
   int uv_ac_delta_q;
-#if CONFIG_ALPHA
-  int a_dc_delta_q;
-  int a_ac_delta_q;
-#endif
 
   /* We allocate a MODE_INFO struct for each macroblock, together with
      an extra row on top and column on the left to simplify prediction. */
diff --git a/vp9/common/vp9_postproc.c b/vp9/common/vp9_postproc.c
index 7d96e6e..abda4e6 100644
--- a/vp9/common/vp9_postproc.c
+++ b/vp9/common/vp9_postproc.c
@@ -263,19 +263,13 @@
                         + 0.0065 + 0.5);
   int i;
 
-  const uint8_t *const srcs[4] = {src->y_buffer, src->u_buffer, src->v_buffer,
-                                  src->alpha_buffer};
-  const int src_strides[4] = {src->y_stride, src->uv_stride, src->uv_stride,
-                              src->alpha_stride};
-  const int src_widths[4] = {src->y_width, src->uv_width, src->uv_width,
-                             src->alpha_width};
-  const int src_heights[4] = {src->y_height, src->uv_height, src->uv_height,
-                              src->alpha_height};
+  const uint8_t *const srcs[3] = {src->y_buffer, src->u_buffer, src->v_buffer};
+  const int src_strides[3] = {src->y_stride, src->uv_stride, src->uv_stride};
+  const int src_widths[3] = {src->y_width, src->uv_width, src->uv_width};
+  const int src_heights[3] = {src->y_height, src->uv_height, src->uv_height};
 
-  uint8_t *const dsts[4] = {dst->y_buffer, dst->u_buffer, dst->v_buffer,
-                            dst->alpha_buffer};
-  const int dst_strides[4] = {dst->y_stride, dst->uv_stride, dst->uv_stride,
-                              dst->alpha_stride};
+  uint8_t *const dsts[3] = {dst->y_buffer, dst->u_buffer, dst->v_buffer};
+  const int dst_strides[3] = {dst->y_stride, dst->uv_stride, dst->uv_stride};
 
   for (i = 0; i < MAX_MB_PLANE; ++i)
     vp9_post_proc_down_and_across(srcs[i], dsts[i],
@@ -289,19 +283,13 @@
                         + 0.0065 + 0.5);
   int i;
 
-  const uint8_t *const srcs[4] = {src->y_buffer, src->u_buffer, src->v_buffer,
-                                  src->alpha_buffer};
-  const int src_strides[4] = {src->y_stride, src->uv_stride, src->uv_stride,
-                              src->alpha_stride};
-  const int src_widths[4] = {src->y_width, src->uv_width, src->uv_width,
-                             src->alpha_width};
-  const int src_heights[4] = {src->y_height, src->uv_height, src->uv_height,
-                              src->alpha_height};
+  const uint8_t *const srcs[3] = {src->y_buffer, src->u_buffer, src->v_buffer};
+  const int src_strides[3] = {src->y_stride, src->uv_stride, src->uv_stride};
+  const int src_widths[3] = {src->y_width, src->uv_width, src->uv_width};
+  const int src_heights[3] = {src->y_height, src->uv_height, src->uv_height};
 
-  uint8_t *const dsts[4] = {dst->y_buffer, dst->u_buffer, dst->v_buffer,
-                            dst->alpha_buffer};
-  const int dst_strides[4] = {dst->y_stride, dst->uv_stride, dst->uv_stride,
-                              dst->alpha_stride};
+  uint8_t *const dsts[3] = {dst->y_buffer, dst->u_buffer, dst->v_buffer};
+  const int dst_strides[3] = {dst->y_stride, dst->uv_stride, dst->uv_stride};
 
   for (i = 0; i < MAX_MB_PLANE; ++i) {
     const int src_stride = src_strides[i];
diff --git a/vp9/decoder/vp9_decodeframe.c b/vp9/decoder/vp9_decodeframe.c
index 614bf4b..28c674a 100644
--- a/vp9/decoder/vp9_decodeframe.c
+++ b/vp9/decoder/vp9_decodeframe.c
@@ -194,7 +194,7 @@
                                     int eob) {
   struct macroblockd_plane *const pd = &xd->plane[plane];
   if (eob > 0) {
-    TX_TYPE tx_type;
+    TX_TYPE tx_type = DCT_DCT;
     int16_t *const dqcoeff = BLOCK_OFFSET(pd->dqcoeff, block);
     if (xd->lossless) {
       tx_type = DCT_DCT;
@@ -1134,14 +1134,18 @@
       if (cm->profile == PROFILE_1 || cm->profile == PROFILE_3) {
         cm->subsampling_x = vp9_rb_read_bit(rb);
         cm->subsampling_y = vp9_rb_read_bit(rb);
-        vp9_rb_read_bit(rb);  // has extra plane
+        if (vp9_rb_read_bit(rb))
+          vpx_internal_error(&cm->error, VPX_CODEC_UNSUP_BITSTREAM,
+                             "Reserved bit set");
       } else {
         cm->subsampling_y = cm->subsampling_x = 1;
       }
     } else {
       if (cm->profile == PROFILE_1 || cm->profile == PROFILE_3) {
         cm->subsampling_y = cm->subsampling_x = 0;
-        vp9_rb_read_bit(rb);  // has extra plane
+        if (vp9_rb_read_bit(rb))
+          vpx_internal_error(&cm->error, VPX_CODEC_UNSUP_BITSTREAM,
+                             "Reserved bit set");
       } else {
         vpx_internal_error(&cm->error, VPX_CODEC_UNSUP_BITSTREAM,
                            "4:4:4 color not supported in profile 0");
diff --git a/vp9/encoder/vp9_bitstream.c b/vp9/encoder/vp9_bitstream.c
index e2f2dfd..841b465 100644
--- a/vp9/encoder/vp9_bitstream.c
+++ b/vp9/encoder/vp9_bitstream.c
@@ -520,7 +520,7 @@
   int i, j, k, l, t;
   switch (cpi->sf.use_fast_coef_updates) {
     case TWO_LOOP: {
-      /* dry run to see if there is any udpate at all needed */
+      /* dry run to see if there is any update at all needed */
       int savings = 0;
       int update[2] = {0, 0};
       for (i = 0; i < PLANE_TYPES; ++i) {
@@ -739,7 +739,6 @@
   write_delta_q(wb, cm->uv_ac_delta_q);
 }
 
-
 static void encode_segmentation(VP9_COMP *cpi,
                                 struct vp9_write_bit_buffer *wb) {
   int i, j;
@@ -802,7 +801,6 @@
   }
 }
 
-
 static void encode_txfm_probs(VP9_COMMON *cm, vp9_writer *w) {
   // Mode
   vp9_write_literal(w, MIN(cm->tx_mode, ALLOW_32X32), 2);
@@ -890,28 +888,28 @@
 }
 
 static int get_refresh_mask(VP9_COMP *cpi) {
-    if (!cpi->multi_arf_allowed && cpi->refresh_golden_frame &&
-        cpi->rc.is_src_frame_alt_ref && !cpi->use_svc) {
-      // Preserve the previously existing golden frame and update the frame in
-      // the alt ref slot instead. This is highly specific to the use of
-      // alt-ref as a forward reference, and this needs to be generalized as
-      // other uses are implemented (like RTC/temporal scaling)
-      //
-      // gld_fb_idx and alt_fb_idx need to be swapped for future frames, but
-      // that happens in vp9_encoder.c:update_reference_frames() so that it can
-      // be done outside of the recode loop.
-      return (cpi->refresh_last_frame << cpi->lst_fb_idx) |
-             (cpi->refresh_golden_frame << cpi->alt_fb_idx);
-    } else {
-      int arf_idx = cpi->alt_fb_idx;
-      if ((cpi->pass == 2) && cpi->multi_arf_allowed) {
-        const GF_GROUP *const gf_group = &cpi->twopass.gf_group;
-        arf_idx = gf_group->arf_update_idx[gf_group->index];
-      }
-      return (cpi->refresh_last_frame << cpi->lst_fb_idx) |
-             (cpi->refresh_golden_frame << cpi->gld_fb_idx) |
-             (cpi->refresh_alt_ref_frame << arf_idx);
+  if (!cpi->multi_arf_allowed && cpi->refresh_golden_frame &&
+      cpi->rc.is_src_frame_alt_ref && !cpi->use_svc) {
+    // Preserve the previously existing golden frame and update the frame in
+    // the alt ref slot instead. This is highly specific to the use of
+    // alt-ref as a forward reference, and this needs to be generalized as
+    // other uses are implemented (like RTC/temporal scaling)
+    //
+    // gld_fb_idx and alt_fb_idx need to be swapped for future frames, but
+    // that happens in vp9_encoder.c:update_reference_frames() so that it can
+    // be done outside of the recode loop.
+    return (cpi->refresh_last_frame << cpi->lst_fb_idx) |
+           (cpi->refresh_golden_frame << cpi->alt_fb_idx);
+  } else {
+    int arf_idx = cpi->alt_fb_idx;
+    if ((cpi->pass == 2) && cpi->multi_arf_allowed) {
+      const GF_GROUP *const gf_group = &cpi->twopass.gf_group;
+      arf_idx = gf_group->arf_update_idx[gf_group->index];
     }
+    return (cpi->refresh_last_frame << cpi->lst_fb_idx) |
+           (cpi->refresh_golden_frame << cpi->gld_fb_idx) |
+           (cpi->refresh_alt_ref_frame << arf_idx);
+  }
 }
 
 static size_t encode_tiles(VP9_COMP *cpi, uint8_t *data_ptr) {
@@ -1068,11 +1066,11 @@
       if (cm->profile == PROFILE_1 || cm->profile == PROFILE_3) {
         vp9_wb_write_bit(wb, cm->subsampling_x);
         vp9_wb_write_bit(wb, cm->subsampling_y);
-        vp9_wb_write_bit(wb, 0);  // has extra plane
+        vp9_wb_write_bit(wb, 0);  // unused
       }
     } else {
       assert(cm->profile == PROFILE_1 || cm->profile == PROFILE_3);
-      vp9_wb_write_bit(wb, 0);  // has extra plane
+      vp9_wb_write_bit(wb, 0);  // unused
     }
 
     write_frame_size(cm, wb);
@@ -1223,4 +1221,3 @@
 
   *size = data - dest;
 }
-
diff --git a/vp9/encoder/vp9_encodeframe.c b/vp9/encoder/vp9_encodeframe.c
index c43ef5b..f80c0bc 100644
--- a/vp9/encoder/vp9_encodeframe.c
+++ b/vp9/encoder/vp9_encodeframe.c
@@ -260,6 +260,8 @@
 
 static void tree_to_node(void *data, BLOCK_SIZE bsize, variance_node *node) {
   int i;
+  node->part_variances = NULL;
+  vpx_memset(node->split, 0, sizeof(node->split));
   switch (bsize) {
     case BLOCK_64X64: {
       v64x64 *vt = (v64x64 *) data;
@@ -638,10 +640,8 @@
 
 void vp9_setup_src_planes(MACROBLOCK *x, const YV12_BUFFER_CONFIG *src,
                           int mi_row, int mi_col) {
-  uint8_t *const buffers[4] = {src->y_buffer, src->u_buffer, src->v_buffer,
-                               src->alpha_buffer};
-  const int strides[4] = {src->y_stride, src->uv_stride, src->uv_stride,
-                          src->alpha_stride};
+  uint8_t *const buffers[3] = {src->y_buffer, src->u_buffer, src->v_buffer };
+  const int strides[3] = {src->y_stride, src->uv_stride, src->uv_stride };
   int i;
 
   // Set current frame pointer.
@@ -2362,9 +2362,9 @@
   else if (cpi->rc.is_src_frame_alt_ref && cpi->refresh_golden_frame)
     return ALTREF_FRAME;
   else if (cpi->refresh_golden_frame || cpi->refresh_alt_ref_frame)
-    return LAST_FRAME;
-  else
     return GOLDEN_FRAME;
+  else
+    return LAST_FRAME;
 }
 
 static TX_MODE select_tx_mode(const VP9_COMP *cpi) {
diff --git a/vp9/encoder/vp9_encoder.c b/vp9/encoder/vp9_encoder.c
index 73379b0..b1a5e08 100644
--- a/vp9/encoder/vp9_encoder.c
+++ b/vp9/encoder/vp9_encoder.c
@@ -1418,17 +1418,6 @@
     src += s->uv_stride;
   } while (--h);
 
-#if CONFIG_ALPHA
-  if (s->alpha_buffer) {
-    src = s->alpha_buffer;
-    h = s->alpha_height;
-    do {
-      fwrite(src, s->alpha_width, 1,  yuv_rec_file);
-      src += s->alpha_stride;
-    } while (--h);
-  }
-#endif
-
   fflush(yuv_rec_file);
 }
 #endif
@@ -1437,22 +1426,18 @@
                                                 YV12_BUFFER_CONFIG *dst) {
   // TODO(dkovalev): replace YV12_BUFFER_CONFIG with vpx_image_t
   int i;
-  const uint8_t *const srcs[4] = {src->y_buffer, src->u_buffer, src->v_buffer,
-                                  src->alpha_buffer};
-  const int src_strides[4] = {src->y_stride, src->uv_stride, src->uv_stride,
-                              src->alpha_stride};
-  const int src_widths[4] = {src->y_crop_width, src->uv_crop_width,
-                             src->uv_crop_width, src->y_crop_width};
-  const int src_heights[4] = {src->y_crop_height, src->uv_crop_height,
-                              src->uv_crop_height, src->y_crop_height};
-  uint8_t *const dsts[4] = {dst->y_buffer, dst->u_buffer, dst->v_buffer,
-                            dst->alpha_buffer};
-  const int dst_strides[4] = {dst->y_stride, dst->uv_stride, dst->uv_stride,
-                              dst->alpha_stride};
-  const int dst_widths[4] = {dst->y_crop_width, dst->uv_crop_width,
-                             dst->uv_crop_width, dst->y_crop_width};
-  const int dst_heights[4] = {dst->y_crop_height, dst->uv_crop_height,
-                              dst->uv_crop_height, dst->y_crop_height};
+  const uint8_t *const srcs[3] = {src->y_buffer, src->u_buffer, src->v_buffer};
+  const int src_strides[3] = {src->y_stride, src->uv_stride, src->uv_stride};
+  const int src_widths[3] = {src->y_crop_width, src->uv_crop_width,
+                             src->uv_crop_width };
+  const int src_heights[3] = {src->y_crop_height, src->uv_crop_height,
+                              src->uv_crop_height};
+  uint8_t *const dsts[3] = {dst->y_buffer, dst->u_buffer, dst->v_buffer};
+  const int dst_strides[3] = {dst->y_stride, dst->uv_stride, dst->uv_stride};
+  const int dst_widths[3] = {dst->y_crop_width, dst->uv_crop_width,
+                             dst->uv_crop_width};
+  const int dst_heights[3] = {dst->y_crop_height, dst->uv_crop_height,
+                              dst->uv_crop_height};
 
   for (i = 0; i < MAX_MB_PLANE; ++i)
     vp9_resize_plane(srcs[i], src_heights[i], src_widths[i], src_strides[i],
@@ -1467,14 +1452,10 @@
   const int src_h = src->y_crop_height;
   const int dst_w = dst->y_crop_width;
   const int dst_h = dst->y_crop_height;
-  const uint8_t *const srcs[4] = {src->y_buffer, src->u_buffer, src->v_buffer,
-                                  src->alpha_buffer};
-  const int src_strides[4] = {src->y_stride, src->uv_stride, src->uv_stride,
-                              src->alpha_stride};
-  uint8_t *const dsts[4] = {dst->y_buffer, dst->u_buffer, dst->v_buffer,
-                            dst->alpha_buffer};
-  const int dst_strides[4] = {dst->y_stride, dst->uv_stride, dst->uv_stride,
-                              dst->alpha_stride};
+  const uint8_t *const srcs[3] = {src->y_buffer, src->u_buffer, src->v_buffer};
+  const int src_strides[3] = {src->y_stride, src->uv_stride, src->uv_stride};
+  uint8_t *const dsts[3] = {dst->y_buffer, dst->u_buffer, dst->v_buffer};
+  const int dst_strides[3] = {dst->y_stride, dst->uv_stride, dst->uv_stride};
   const InterpKernel *const kernel = vp9_get_interp_kernel(EIGHTTAP);
   int x, y, i;
 
@@ -2245,15 +2226,6 @@
 
   set_speed_features(cpi);
 
-#if CONFIG_DENOISING
-#ifdef OUTPUT_YUV_DENOISED
-  if (cpi->oxcf.noise_sensitivity > 0) {
-    vp9_write_yuv_frame_420(&cpi->denoiser.running_avg_y[INTRA_FRAME],
-                            yuv_denoised_file);
-  }
-#endif
-#endif
-
   // Decide q and q bounds.
   q = vp9_rc_pick_q_and_bounds(cpi, &bottom_index, &top_index);
 
@@ -2269,6 +2241,16 @@
     encode_with_recode_loop(cpi, size, dest, q, bottom_index, top_index);
   }
 
+#if CONFIG_DENOISING
+#ifdef OUTPUT_YUV_DENOISED
+  if (cpi->oxcf.noise_sensitivity > 0) {
+    vp9_write_yuv_frame_420(&cpi->denoiser.running_avg_y[INTRA_FRAME],
+                            yuv_denoised_file);
+  }
+#endif
+#endif
+
+
   // Special case code to reduce pulsing when key frames are forced at a
   // fixed interval. Note the reconstruction error if it is the frame before
   // the force key frame
@@ -2441,15 +2423,13 @@
   int res = 0;
   const int subsampling_x = sd->uv_width  < sd->y_width;
   const int subsampling_y = sd->uv_height < sd->y_height;
-  const int is_spatial_svc = cpi->use_svc &&
-                             (cpi->svc.number_temporal_layers == 1);
 
   check_initial_width(cpi, subsampling_x, subsampling_y);
 
   vpx_usec_timer_start(&timer);
 
-#ifdef CONFIG_SPATIAL_SVC
-  if (is_spatial_svc)
+#if CONFIG_SPATIAL_SVC
+  if (cpi->use_svc && cpi->svc.number_temporal_layers == 1)
     res = vp9_svc_lookahead_push(cpi, cpi->lookahead, sd, time_stamp, end_time,
                                  frame_flags);
   else
@@ -2580,7 +2560,9 @@
     return -1;
 
   if (is_spatial_svc && cpi->pass == 2) {
+#if CONFIG_SPATIAL_SVC
     vp9_svc_lookahead_peek(cpi, cpi->lookahead, 0, 1);
+#endif
     vp9_restore_layer_context(cpi);
   }
 
@@ -2603,7 +2585,7 @@
   if (arf_src_index) {
     assert(arf_src_index <= rc->frames_to_key);
 
-#ifdef CONFIG_SPATIAL_SVC
+#if CONFIG_SPATIAL_SVC
     if (is_spatial_svc)
       cpi->source = vp9_svc_lookahead_peek(cpi, cpi->lookahead,
                                            arf_src_index, 0);
@@ -2613,7 +2595,7 @@
     if (cpi->source != NULL) {
       cpi->alt_ref_source = cpi->source;
 
-#ifdef CONFIG_SPATIAL_SVC
+#if CONFIG_SPATIAL_SVC
       if (is_spatial_svc && cpi->svc.spatial_layer_id > 0) {
         int i;
         // Reference a hidden frame from a lower layer
@@ -2648,7 +2630,7 @@
   if (!cpi->source) {
     // Get last frame source.
     if (cm->current_video_frame > 0) {
-#ifdef CONFIG_SPATIAL_SVC
+#if CONFIG_SPATIAL_SVC
       if (is_spatial_svc)
         cpi->last_source = vp9_svc_lookahead_peek(cpi, cpi->lookahead, -1, 0);
       else
@@ -2659,7 +2641,7 @@
     }
 
     // Read in the source frame.
-#ifdef CONFIG_SPATIAL_SVC
+#if CONFIG_SPATIAL_SVC
     if (is_spatial_svc)
       cpi->source = vp9_svc_lookahead_pop(cpi, cpi->lookahead, flush);
     else
@@ -2703,6 +2685,9 @@
     cpi->last_end_time_stamp_seen = cpi->source->ts_start;
   }
 
+  // Clear down mmx registers
+  vp9_clear_system_state();
+
   // adjust frame rates based on timestamps given
   if (cm->show_frame) {
     adjust_frame_rate(cpi);
@@ -2717,9 +2702,6 @@
   // start with a 0 size frame
   *size = 0;
 
-  // Clear down mmx registers
-  vp9_clear_system_state();
-
   /* find a free buffer for the new frame, releasing the reference previously
    * held.
    */
diff --git a/vp9/encoder/vp9_encoder.h b/vp9/encoder/vp9_encoder.h
index 1ad65b9..1419cf6 100644
--- a/vp9/encoder/vp9_encoder.h
+++ b/vp9/encoder/vp9_encoder.h
@@ -509,9 +509,8 @@
 }
 
 static INLINE int get_token_alloc(int mb_rows, int mb_cols) {
-  // TODO(JBB): make this work for alpha channel and double check we can't
-  // exceed this token count if we have a 32x32 transform crossing a boundary
-  // at a multiple of 16.
+  // TODO(JBB): double check we can't exceed this token count if we have a
+  // 32x32 transform crossing a boundary at a multiple of 16.
   // mb_rows, cols are in units of 16 pixels. We assume 3 planes all at full
   // resolution. We assume up to 1 token per pixel, and then allow
   // a head room of 4.
diff --git a/vp9/encoder/vp9_extend.c b/vp9/encoder/vp9_extend.c
index dcbb5ac..e8517c8 100644
--- a/vp9/encoder/vp9_extend.c
+++ b/vp9/encoder/vp9_extend.c
@@ -75,18 +75,6 @@
   const int eb_uv = eb_y >> uv_height_subsampling;
   const int er_uv = er_y >> uv_width_subsampling;
 
-#if CONFIG_ALPHA
-  const int et_a = dst->border >> (dst->alpha_height != dst->y_height);
-  const int el_a = dst->border >> (dst->alpha_width != dst->y_width);
-  const int eb_a = et_a + dst->alpha_height - src->alpha_height;
-  const int er_a = el_a + dst->alpha_width - src->alpha_width;
-
-  copy_and_extend_plane(src->alpha_buffer, src->alpha_stride,
-                        dst->alpha_buffer, dst->alpha_stride,
-                        src->alpha_width, src->alpha_height,
-                        et_a, el_a, eb_a, er_a);
-#endif
-
   copy_and_extend_plane(src->y_buffer, src->y_stride,
                         dst->y_buffer, dst->y_stride,
                         src->y_width, src->y_height,
diff --git a/vp9/encoder/vp9_lookahead.h b/vp9/encoder/vp9_lookahead.h
index f9cc3c8..678c51a 100644
--- a/vp9/encoder/vp9_lookahead.h
+++ b/vp9/encoder/vp9_lookahead.h
@@ -14,7 +14,7 @@
 #include "vpx_scale/yv12config.h"
 #include "vpx/vpx_integer.h"
 
-#ifdef CONFIG_SPATIAL_SVC
+#if CONFIG_SPATIAL_SVC
 #include "vpx/vp8cx.h"
 #include "vpx/vpx_encoder.h"
 #endif
@@ -31,7 +31,7 @@
   int64_t             ts_end;
   unsigned int        flags;
 
-#ifdef CONFIG_SPATIAL_SVC
+#if CONFIG_SPATIAL_SVC
   vpx_svc_parameters_t svc_params[VPX_SS_MAX_LAYERS];
 #endif
 };
diff --git a/vp9/encoder/vp9_quantize.c b/vp9/encoder/vp9_quantize.c
index 370e1ce..e153b20 100644
--- a/vp9/encoder/vp9_quantize.c
+++ b/vp9/encoder/vp9_quantize.c
@@ -315,16 +315,6 @@
       quants->uv_zbin[q][i] = ROUND_POWER_OF_TWO(qzbin_factor * quant, 7);
       quants->uv_round[q][i] = (qrounding_factor * quant) >> 7;
       cm->uv_dequant[q][i] = quant;
-
-#if CONFIG_ALPHA
-      // alpha
-      quant = i == 0 ? vp9_dc_quant(q, cm->a_dc_delta_q)
-                     : vp9_ac_quant(q, cm->a_ac_delta_q);
-      invert_quant(&quants->a_quant[q][i], &quants->a_quant_shift[q][i], quant);
-      quants->a_zbin[q][i] = ROUND_POWER_OF_TWO(qzbin_factor * quant, 7);
-      quants->a_round[q][i] = (qrounding_factor * quant) >> 7;
-      cm->a_dequant[q][i] = quant;
-#endif
     }
 
     for (i = 2; i < 8; i++) {
@@ -343,14 +333,6 @@
       quants->uv_zbin[q][i] = quants->uv_zbin[q][1];
       quants->uv_round[q][i] = quants->uv_round[q][1];
       cm->uv_dequant[q][i] = cm->uv_dequant[q][1];
-
-#if CONFIG_ALPHA
-      quants->a_quant[q][i] = quants->a_quant[q][1];
-      quants->a_quant_shift[q][i] = quants->a_quant_shift[q][1];
-      quants->a_zbin[q][i] = quants->a_zbin[q][1];
-      quants->a_round[q][i] = quants->a_round[q][1];
-      cm->a_dequant[q][i] = cm->a_dequant[q][1];
-#endif
     }
   }
 }
@@ -387,15 +369,6 @@
     xd->plane[i].dequant = cm->uv_dequant[qindex];
   }
 
-#if CONFIG_ALPHA
-  x->plane[3].quant = quants->a_quant[qindex];
-  x->plane[3].quant_shift = quants->a_quant_shift[qindex];
-  x->plane[3].zbin = quants->a_zbin[qindex];
-  x->plane[3].round = quants->a_round[qindex];
-  x->plane[3].zbin_extra = (int16_t)((cm->a_dequant[qindex][1] * zbin) >> 7);
-  xd->plane[3].dequant = cm->a_dequant[qindex];
-#endif
-
   x->skip_block = vp9_segfeature_active(&cm->seg, segment_id, SEG_LVL_SKIP);
   x->q_index = qindex;
 
diff --git a/vp9/encoder/vp9_quantize.h b/vp9/encoder/vp9_quantize.h
index 24e4491..262529b 100644
--- a/vp9/encoder/vp9_quantize.h
+++ b/vp9/encoder/vp9_quantize.h
@@ -35,13 +35,6 @@
   DECLARE_ALIGNED(16, int16_t, uv_quant_shift[QINDEX_RANGE][8]);
   DECLARE_ALIGNED(16, int16_t, uv_zbin[QINDEX_RANGE][8]);
   DECLARE_ALIGNED(16, int16_t, uv_round[QINDEX_RANGE][8]);
-
-#if CONFIG_ALPHA
-  DECLARE_ALIGNED(16, int16_t, a_quant[QINDEX_RANGE][8]);
-  DECLARE_ALIGNED(16, int16_t, a_quant_shift[QINDEX_RANGE][8]);
-  DECLARE_ALIGNED(16, int16_t, a_zbin[QINDEX_RANGE][8]);
-  DECLARE_ALIGNED(16, int16_t, a_round[QINDEX_RANGE][8]);
-#endif
 } QUANTS;
 
 void vp9_quantize_dc(const int16_t *coeff_ptr, int skip_block,
diff --git a/vp9/encoder/vp9_rd.c b/vp9/encoder/vp9_rd.c
index d26ac23..c149c61 100644
--- a/vp9/encoder/vp9_rd.c
+++ b/vp9/encoder/vp9_rd.c
@@ -432,10 +432,6 @@
   dst[1].buf = src->u_buffer;
   dst[2].buf = src->v_buffer;
   dst[1].stride = dst[2].stride = src->uv_stride;
-#if CONFIG_ALPHA
-  dst[3].buf = src->alpha_buffer;
-  dst[3].stride = src->alpha_stride;
-#endif
 
   for (i = 0; i < MAX_MB_PLANE; ++i) {
     setup_pred_plane(dst + i, dst[i].buf, dst[i].stride, mi_row, mi_col,
diff --git a/vp9/encoder/vp9_rdopt.c b/vp9/encoder/vp9_rdopt.c
index c65af75..0195f9b 100644
--- a/vp9/encoder/vp9_rdopt.c
+++ b/vp9/encoder/vp9_rdopt.c
@@ -3026,7 +3026,6 @@
   RD_OPT *const rd_opt = &cpi->rd;
   MACROBLOCKD *const xd = &x->e_mbd;
   MB_MODE_INFO *const mbmi = &xd->mi[0]->mbmi;
-  const struct segmentation *const seg = &cm->seg;
   unsigned char segment_id = mbmi->segment_id;
   const int comp_pred = 0;
   int i;
@@ -3052,7 +3051,7 @@
 
   *returnrate = INT_MAX;
 
-  assert(vp9_segfeature_active(seg, segment_id, SEG_LVL_SKIP));
+  assert(vp9_segfeature_active(&cm->seg, segment_id, SEG_LVL_SKIP));
 
   mbmi->mode = ZEROMV;
   mbmi->uv_mode = DC_PRED;
diff --git a/vp9/encoder/vp9_svc_layercontext.c b/vp9/encoder/vp9_svc_layercontext.c
index 1eb4509..f8d1a83 100644
--- a/vp9/encoder/vp9_svc_layercontext.c
+++ b/vp9/encoder/vp9_svc_layercontext.c
@@ -223,6 +223,7 @@
          cpi->svc.layer_context[cpi->svc.spatial_layer_id].is_key_frame;
 }
 
+#if CONFIG_SPATIAL_SVC
 int vp9_svc_lookahead_push(const VP9_COMP *const cpi, struct lookahead_ctx *ctx,
                            YV12_BUFFER_CONFIG *src, int64_t ts_start,
                            int64_t ts_end, unsigned int flags) {
@@ -352,3 +353,4 @@
 
   return buf;
 }
+#endif
diff --git a/vp9/vp9_cx_iface.c b/vp9/vp9_cx_iface.c
index 2522fd0..b3dc0b1 100644
--- a/vp9/vp9_cx_iface.c
+++ b/vp9/vp9_cx_iface.c
@@ -176,7 +176,7 @@
 
   RANGE_CHECK(cfg, ss_number_layers, 1, VPX_SS_MAX_LAYERS);
 
-#ifdef CONFIG_SPATIAL_SVC
+#if CONFIG_SPATIAL_SVC
   if (cfg->ss_number_layers > 1) {
     unsigned int i, alt_ref_sum = 0;
     for (i = 0; i < cfg->ss_number_layers; ++i) {
@@ -403,7 +403,7 @@
     int i;
     for (i = 0; i < VPX_SS_MAX_LAYERS; ++i) {
       oxcf->ss_target_bitrate[i] =  1000 * cfg->ss_target_bitrate[i];
-#ifdef CONFIG_SPATIAL_SVC
+#if CONFIG_SPATIAL_SVC
       oxcf->ss_play_alternate[i] =  cfg->ss_enable_auto_alt_ref[i];
 #endif
     }
@@ -888,14 +888,14 @@
         vpx_codec_cx_pkt_t pkt;
         VP9_COMP *const cpi = (VP9_COMP *)ctx->cpi;
 
-#ifdef CONFIG_SPATIAL_SVC
+#if CONFIG_SPATIAL_SVC
         if (cpi->use_svc && cpi->svc.number_temporal_layers == 1)
           cpi->svc.layer_context[cpi->svc.spatial_layer_id].layer_size += size;
 #endif
 
         // Pack invisible frames with the next visible frame
         if (cpi->common.show_frame == 0
-#ifdef CONFIG_SPATIAL_SVC
+#if CONFIG_SPATIAL_SVC
             || (cpi->use_svc && cpi->svc.number_temporal_layers == 1 &&
                 cpi->svc.spatial_layer_id < cpi->svc.number_spatial_layers - 1)
 #endif
@@ -923,7 +923,7 @@
         pkt.data.frame.flags = lib_flags << 16;
 
         if (lib_flags & FRAMEFLAGS_KEY
-#ifdef CONFIG_SPATIAL_SVC
+#if CONFIG_SPATIAL_SVC
             || (cpi->use_svc && cpi->svc.number_temporal_layers == 1 &&
                 cpi->svc.layer_context[0].is_key_frame)
 #endif
@@ -965,7 +965,7 @@
         vpx_codec_pkt_list_add(&ctx->pkt_list.head, &pkt);
         cx_data += size;
         cx_data_sz -= size;
-#ifdef CONFIG_SPATIAL_SVC
+#if CONFIG_SPATIAL_SVC
         if (cpi->use_svc && cpi->svc.number_temporal_layers == 1) {
           vpx_codec_cx_pkt_t pkt = {0};
           int i;
@@ -1287,7 +1287,7 @@
       9999,               // kf_max_dist
 
       VPX_SS_DEFAULT_LAYERS,  // ss_number_layers
-#ifdef CONFIG_SPATIAL_SVC
+#if CONFIG_SPATIAL_SVC
       {0},
 #endif
       {0},                    // ss_target_bitrate
diff --git a/vp9/vp9_dx_iface.c b/vp9/vp9_dx_iface.c
index 4a23fdb..ef9d10d 100644
--- a/vp9/vp9_dx_iface.c
+++ b/vp9/vp9_dx_iface.c
@@ -155,11 +155,11 @@
         rb.bit_offset += 1;  // [16,235] (including xvycc) vs [0,255] range
         if (profile == PROFILE_1 || profile == PROFILE_3) {
           rb.bit_offset += 2;  // subsampling x/y
-          rb.bit_offset += 1;  // has extra plane
+          rb.bit_offset += 1;  // unused
         }
       } else {
         if (profile == PROFILE_1 || profile == PROFILE_3) {
-          rb.bit_offset += 1;  // has extra plane
+          rb.bit_offset += 1;  // unused
         } else {
           // RGB is only available in version 1
           return VPX_CODEC_UNSUP_BITSTREAM;
diff --git a/vp9/vp9_iface_common.h b/vp9/vp9_iface_common.h
index b90c37b..fc98b62 100644
--- a/vp9/vp9_iface_common.h
+++ b/vp9/vp9_iface_common.h
@@ -41,11 +41,11 @@
   img->planes[VPX_PLANE_Y] = yv12->y_buffer;
   img->planes[VPX_PLANE_U] = yv12->u_buffer;
   img->planes[VPX_PLANE_V] = yv12->v_buffer;
-  img->planes[VPX_PLANE_ALPHA] = yv12->alpha_buffer;
+  img->planes[VPX_PLANE_ALPHA] = NULL;
   img->stride[VPX_PLANE_Y] = yv12->y_stride;
   img->stride[VPX_PLANE_U] = yv12->uv_stride;
   img->stride[VPX_PLANE_V] = yv12->uv_stride;
-  img->stride[VPX_PLANE_ALPHA] = yv12->alpha_stride;
+  img->stride[VPX_PLANE_ALPHA] = yv12->y_stride;
   img->bps = bps;
   img->user_priv = user_priv;
   img->img_data = yv12->buffer_alloc;
@@ -58,7 +58,6 @@
   yv12->y_buffer = img->planes[VPX_PLANE_Y];
   yv12->u_buffer = img->planes[VPX_PLANE_U];
   yv12->v_buffer = img->planes[VPX_PLANE_V];
-  yv12->alpha_buffer = img->planes[VPX_PLANE_ALPHA];
 
   yv12->y_crop_width  = img->d_w;
   yv12->y_crop_height = img->d_h;
@@ -70,21 +69,10 @@
   yv12->uv_height = img->y_chroma_shift == 1 ? (1 + yv12->y_height) / 2
                                              : yv12->y_height;
 
-  yv12->alpha_width = yv12->alpha_buffer ? img->d_w : 0;
-  yv12->alpha_height = yv12->alpha_buffer ? img->d_h : 0;
-
   yv12->y_stride = img->stride[VPX_PLANE_Y];
   yv12->uv_stride = img->stride[VPX_PLANE_U];
-  yv12->alpha_stride = yv12->alpha_buffer ? img->stride[VPX_PLANE_ALPHA] : 0;
 
   yv12->border  = (img->stride[VPX_PLANE_Y] - img->w) / 2;
-#if CONFIG_ALPHA
-  // For development purposes, force alpha to hold the same data as Y for now.
-  yv12->alpha_buffer = yv12->y_buffer;
-  yv12->alpha_width = yv12->y_width;
-  yv12->alpha_height = yv12->y_height;
-  yv12->alpha_stride = yv12->y_stride;
-#endif
   return VPX_CODEC_OK;
 }
 
diff --git a/vpx/vpx_encoder.h b/vpx/vpx_encoder.h
index 345c73b..9d2f18c 100644
--- a/vpx/vpx_encoder.h
+++ b/vpx/vpx_encoder.h
@@ -157,7 +157,7 @@
     VPX_CODEC_STATS_PKT,       /**< Two-pass statistics for this frame */
     VPX_CODEC_FPMB_STATS_PKT,  /**< first pass mb statistics for this frame */
     VPX_CODEC_PSNR_PKT,        /**< PSNR statistics for this frame */
-#ifdef CONFIG_SPATIAL_SVC
+#if CONFIG_SPATIAL_SVC
     VPX_CODEC_SPATIAL_SVC_LAYER_SIZES, /**< Sizes for each layer in this frame*/
 #endif
     VPX_CODEC_CUSTOM_PKT = 256 /**< Algorithm extensions  */
@@ -196,7 +196,7 @@
         double       psnr[4];     /**< PSNR, total/y/u/v */
       } psnr;                       /**< data for PSNR packet */
       struct vpx_fixed_buf raw;     /**< data for arbitrary packets */
-#ifdef CONFIG_SPATIAL_SVC
+#if CONFIG_SPATIAL_SVC
       size_t layer_sizes[VPX_SS_MAX_LAYERS];
 #endif
 
@@ -637,7 +637,7 @@
      */
     unsigned int           ss_number_layers;
 
-#ifdef CONFIG_SPATIAL_SVC
+#if CONFIG_SPATIAL_SVC
     /*!\brief Enable auto alt reference flags for each spatial layer.
      *
      * These values specify if auto alt reference frame is enabled for each